Package: conStruct 1.0.6

conStruct: Models Spatially Continuous and Discrete Population Genetic Structure

A method for modeling genetic data as a combination of discrete layers, within each of which relatedness may decay continuously with geographic distance. This package contains code for running analyses (which are implemented in the modeling language 'rstan') and visualizing and interpreting output. See the paper for more details on the model and its utility.

Authors:Gideon Bradburd [aut, cre]

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conStruct.pdf |conStruct.html✨
conStruct/json (API)
NEWS

# Install 'conStruct' in R:
install.packages('conStruct', repos = c('https://gbradburd.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gbradburd/construct/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • conStruct.data - Example dataset used in a 'conStruct' analysis
  • data.block - Example 'data.block' generated by a 'conStruct' analysis

On CRAN:

Conda:

cpp

8.39 score 35 stars 70 scripts 335 downloads 10 mentions 9 exports 59 dependencies

Last updated 1 years agofrom:a41049e475. Checks:5 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 25 2025
R-4.5-win-x86_64OKMar 25 2025
R-4.5-mac-x86_64OKMar 25 2025
R-4.5-mac-aarch64OKMar 25 2025
R-4.5-linux-x86_64OKMar 25 2025
R-4.4-win-x86_64NOTEMar 25 2025
R-4.4-mac-x86_64NOTEMar 25 2025
R-4.4-mac-aarch64NOTEMar 25 2025
R-4.4-linux-x86_64NOTEMar 25 2025
R-4.3-win-x86_64NOTEMar 25 2025
R-4.3-mac-x86_64NOTEMar 25 2025
R-4.3-mac-aarch64NOTEMar 25 2025

Exports:calculate.layer.contributioncompare.two.runsconStructmake.admix.pie.plotmake.all.the.plotsmake.structure.plotmatch.layers.x.runsstructure2conStructx.validation

Dependencies:abindbackportsBHcallrcarolinecheckmateclicodetoolscolorspacedescdistributionaldoParallelfansifarverforeachgenericsggplot2gluegridExtragtablegtoolsinlineisobanditeratorslabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsscalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr

How to format data for a conStruct analysis

Gideon Bradburd

Rendered fromformat-data.Rmdusingknitr::rmarkdownon Mar 25 2025.

Last update: 2023-12-21
Started: 2018-08-15

How to compare conStruct model runs

Gideon Bradburd

Rendered frommodel-comparison.Rmdusingknitr::rmarkdownon Mar 25 2025.

Last update: 2018-09-05
Started: 2018-08-21

How to run a conStruct analysis

Gideon Bradburd

Rendered fromrun-conStruct.Rmdusingknitr::rmarkdownon Mar 25 2025.

Last update: 2018-09-05
Started: 2018-08-15

How to visualize the results of a conStruct analysis

Gideon Bradburd

Rendered fromvisualize-results.Rmdusingknitr::rmarkdownon Mar 25 2025.

Last update: 2019-01-02
Started: 2018-09-04