conStruct - Models Spatially Continuous and Discrete Population Genetic Structure
A method for modeling genetic data as a combination of discrete layers, within each of which relatedness may decay continuously with geographic distance. This package contains code for running analyses (which are implemented in the modeling language 'rstan') and visualizing and interpreting output. See the paper for more details on the model and its utility.
Last updated 11 months ago
8.54 score 35 stars 49 scripts 318 downloadsBEDASSLE - Quantifies Effects of Geo/Eco Distance on Genetic Differentiation
Provides functions that allow users to quantify the relative contributions of geographic and ecological distances to empirical patterns of genetic differentiation on a landscape. Specifically, we use a custom Markov chain Monte Carlo (MCMC) algorithm, which is used to estimate the parameters of the inference model, as well as functions for performing MCMC diagnosis and assessing model adequacy.
Last updated 11 months ago
3.28 score 2 stars 1 packages 32 scripts 372 downloads